Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs1823685 chr2:61435085 G/A 6.7E-5 177 23.77 31.48 10.3 KM Plot
PCPG rs182657812 chr2:118540747 A/G 1.67E-5 177 24.85 30.33 11.65 KM Plot
PCPG rs182963805 chr12:56671147 G/A 9.63E-8 178 25.35 27.33 0.8 KM Plot
PCPG rs183041801 chr16:90022269 A/G 1.45E-8 171 25.67 20.17 6.62 KM Plot
PCPG rs1830844 chr10:26931449 C/T 0.000146 177 26.95 21.55 24.53 KM Plot
PCPG rs183417401 chr5:171530761 T/A 0.000107 176 25.87 20.37 17.12 KM Plot
PCPG rs183670 chr5:33992261 G/A 1.0E-5 172 24.62 30.93 25.17 KM Plot
PCPG rs183689857 chr2:118563281 A/C 1.77E-5 177 25.28 25.97 11.65 KM Plot
PCPG rs183931511 chr5:175564977 G/C 2.8E-6 174 25.87 21.77 22.37 KM Plot
PCPG rs184104056 chr12:56688237 G/A 9.63E-8 178 25.35 27.33 0.8 KM Plot
PCPG rs185011215 chr7:1110322 A/G 0.000259 174 25.7 24.95 49.58 KM Plot
PCPG rs1853659 chr6:150396303 A/G 3.95E-5 171 3.17 24.62 25.92 KM Plot
PCPG rs1861617 chr2:230492411 A/G 1.23E-8 172 5.18 22.35 25.87 KM Plot
PCPG rs1865037 chr19:19709129 G/A 0.000453 175 25.42 26.57 20.25 KM Plot
PCPG rs187477195 chr12:31791509 A/G 0.000374 174 24.5 28.3 16.83 KM Plot